Publication
Booth, L.N., Tuch, B.B., Johnson, A.D. (2010) Intercalation of a new tier of transcriptional regulation into an ancient circuit. Nature, 468(7326):959-63.
Mitrovich, Q.M., Tuch, B.B., De La Vega, F.M., Guthrie, C., Johnson, A.D. (2010). Evolution of yeast noncoding RNAs reveals an alternative mechanism for widespread intron loss. Science, 330(6005):838-41.
Hernday, A.D., Noble, S.M., Mitrovich, Q.M., Johnson, A.D. (2010) Genetics and molecular biology in Candida albicans. Methods Enzymol, 470: 737-58.
Li, H., Johnson, A.D. (2010) Evolution of transcription networks -lessons from yeasts. Curr Biol., 20(17):R746-53.
Tuch, B.B., Mitrovich, Q.M., Homann, O.R., Hernday, A.D., Monighetti, C.K., De La Vega, F.M., Johnson, A.D. (2010). The transcriptomes of two heritable cell types illuminate the circuit governing their differentiation. PLoS Genet., 6(8):e1001070.
Lohse, M.B., Johnson, A.D. (2010) Temporal anatomy of an epigenetic switch in cell programming: the white-opaque transition of C. albicans. Mol Microbiol., 1365-2958.
Lohse, M.B., Zordan, R.E., Cain, C.W., Johnson, A.D. (2010) Distinct class of DNA-binding domains is exemplified by a master regulator of phenotypic switching in Candida albicans. Proc Natl Acad Sci USA, 107(32):14105-10.
Noble, S.M., French S., Kohn, L.A., Chen, V., Johnson, A.D. (2010) Systematic screens of a Candida albicans homozygous deletion library decouple morphogenetic switching and pathogenicity. Nat Genet., 42(7):590-8.
Homann, O.R., Johnson, A.D. (2010). MochiView: versatile software for genome browsing and DNA motif analysis. BMC Biol., 8:49.
Homann, O.R., Dea, J., Noble, S.M., Johnson, A.D. (2009). A phenotypic profile of the Candida albicans regulatory network. PLoS Genet., 5(12):e1000783.
Lohse, M.B., Johnson, A.D. (2009). White-opaque switching in Candida albicans. Curr Opin Microbiol., 12(6):650-4.
Elson, S.L., Noble, S.M., Solis, N.V., Filler, S.G., Johnson, A.D. (2009). An RNA transport system in Candida albicans regulates hyphal morphology and invasive growth. PLoS Genet, 5(9):e1000664.
Nobile, C.J., Nett, J.E., Hernday, A.D., Homann, O.R., Deneault J.S., Nantel, A., Andes, D., Johnson A.D., Mitchell A.P. (2009). Biofilm matrix regulation by Candida albicans Zap1. PLoS Biol, 7(6):e1000133.
Strochein-Stevenson, S.L., Foley, E., O’Farrell, P.H., Johnson, A.D. (2009). Phagocytosis of Candida albicans by RNAi-treated Drosophila S2 cells. Methods Mol Biol, 470:347-58.
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Tuch, B.B., Li, H., & Johnson, A.D. (2008). Evolution of eukaryotic transcription circuits. Science, 319(5871), 1797-9.
Tuch, B.B., Galgoczy, D.J., Hernday, A.D., Li, H., Johnson AD. (2008). The evolution of combinatorial gene regulation in fungi. PLoS biology, 6(2).
Lohse, M.B., Johnson, A.D. (2008). Differential phagocytosis of white versus opaque Candida albicans by Drosophila and mouse phagocytes. PLoS One, 3(1):e1473.
Zordan R.E., Miller M.G., Galgoczy D.J., Tuch B.B., Johnson A.D. (2007). Interlocking transcriptional feedback loops control white-opaque switching in Candida albicans. PLoS Biol., Sep: 5:e256.
Noble, S.M., & Johnson, A.D. (2007). Genetics of Candida albicans, a diploid human fungal pathogen. Annu Rev Genet. 41:193-211.
Mitrovich, Q.M., Tuch, B.B., Guthrie, C., Johnson, A.D. (2007). Computational and experimental approaches double the number of known introns in the pathogenic yeast Candida albicans. Genome Res., 17:492-502.
Tsong, A.E., Tuch, B.B., Li, H., Johnson A.D. (2006). Evolution of alternative transcriptional circuits with identical logic. Nature 443:415-420.
Zordan, R.E., Galgoczy, D.J., & Johnson, A.D. (2006). Epigenetic properties of white-opaque switching in Candida albicans are based on a self-sustaining transcriptional feedback loop. Proc. Natl. Acad. Sci. USA, 103:12807-12.
Stroschein-Stevenson, S.L., Foley, E., O’Farrell, P.H., Johnson, A.D. (2006). Identification of Drosophila gene products required for phagocytosis of Candida albicans. PLoS Biol., 4(1).
Bennett, R.J., and Johnson, A.D. (2005). Mating in Candida albicans and the search for a sexual cycle. Annu. Rev. Microbiol. 59:233-55.
Green, S. R., and Johnson, A.D. (2004). Promoter-dependent Roles for the Srb10 Cyclin-dependent kinase and the Hda1 Deacetylase in Tup1-mediated Repression in Saccharomyces cerevisiae. Mol. Biol. Cell 15:4191-4202.
Miller, M.G., and Johnson, A.D. (2002). White-opaque switching in Candida albicans is controlled by mating-type (MTL) locus homeodomain proteins and allows efficient mating. Cell 110: 293-302.